CDS

Accession Number TCMCG006C117354
gbkey CDS
Protein Id XP_013646653.1
Location join(33537345..33537504,33537569..33537780,33538419..33538556,33538666..33538839,33539147..33539243,33539503..33539615,33539696..33539818,33539935..33540006,33540570..33540662,33540989..33541099,33541181..33541303,33541551..33541736,33541815..33541889,33542326..33542462,33542625..33542759,33542863..33543008,33543091..33543156,33543391..33543497,33543581..33543661,33543751..33543825,33543910..33544011,33544194..33544362,33544444..33544589,33544728..33544811,33544880..33544980,33545161..33545311,33545521..33545595,33545696..33545843,33546217..33546862,33547002..33547056,33547139..33547284,33547347..33547530,33547660..33547758,33547921..33548288,33548375..33548551,33548721..33548817,33548899..33549054,33549146..33549376,33549465..33549548,33549640..33549747)
Gene LOC106351390
GeneID 106351390
Organism Brassica napus

Protein

Length 1916aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013791199.2
Definition rRNA biogenesis protein RRP5-like [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category A
Description Protein RRP5 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14792        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000460        [VIEW IN EMBL-EBI]
GO:0000462        [VIEW IN EMBL-EBI]
GO:0000466        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009553        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030490        [VIEW IN EMBL-EBI]
GO:0030684        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032040        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042274        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTGGCTCCATCGAAAAGAGTTCCAAGCGGAAAACGCAACGATTCAACAAAGGCATTCAAATCATCGAGGAAACCGTTCAAAAAGACGAAGGACGATGTCGCCGCAAGGTCTGAAGCCATGGCTCTGCAGCTCGAAGAGGTTCCCGACTTCCCTCGAGGTGGAGGCTCTTCTCTGAGCAAGAAAGAGCGTGAGAAGATTCACGAAGAGGTCGACGCTGAGTTTGACGCTGGTGATGAGCGTGTTGCTAAGAGGAGTAAAGGAGGGAAACCTAAGAAGAGAAACACTAGCGATGTAGATGAATTGGGATCTCTTTTTGACGGTGGTTTAACTGGGAAACGGCCAAGATATGCTAATAAGATCACCATTAAGAATATTTCCGCCGGAATGAAGCTTTTGGGGGTTGTTACTGAAGTCAACCAGAAAGATATTGTAATTAGTCTTCCAGGGGGCTTACGTGGTTTAGTTCGCGCAAGCGAGGCGTTGGATTTTACAGATTTCGGAACTGAGGACGATGAAAATGAACTTCTTCGAGACATCTTTTCTGTGGGTCAGCTTGTTCCTTGCATTGTGTTGCAGTTAGATGATGATAAGAAGGAGGCGGGCAAAAGAAAAATATGGCTTTCATTGCGACTTTCCTTATTGCACAAGGGATTCAGTTTGGATTCCTTTCAACCTGGGATGGTAGTAACTGCAAATGTGAAAAGCGTGGAAGATCATGGTTATATCCTTCAATTTGGAATGCCTTCTATCACAGGATTTATCAAGAAAAGCCATGAAGGAACTCGGGAGTTAAAGACTGGGCAGCTTATTCAGGGCGTGGTTACAAATATTGATAAAGAACGTAAAATTGTTAGTCTTAGTTCTGACCCAGATTCAGTGGCAAAGTGTGTGACCAAGGATTTGAGTGGGATGTCGTTCGATCTTCTCATCCCAGGCATGATGGTTAATGCCCGTGTTCAATCTGCCCTTGAGAATGGATTACTATTAGGATTTCTTATGTACTTTACTGGAACGGTTGATCTTTTTCATCTACAAAATCCATTATGTAACAAGAGCTGGAAGGATGAATATAATCCGTCTAAGATGGTTAATGCTAGAATATTGTTTATCGATCCATCAACTAGAGCTGTTGGTTTGACGTTAAACCCACATCTTGTTGGCAACAAGGCTCCTCCTCTGCATGTCTCCAGCGGAGACATATTCGACGAAGCAAACGTTGTCCGTGTTGATAAATCAGGCCTTCTTCTTGAGCTCCCTTCTAAGCCTGTTTCAACGCCAGCATATGTTAGCACATATGACGCTGCTGAAGATGAAGTTAAGAAACTTGAAAAGAAGTTTAAGGAAGGAAGCCGCATCCGTGTTCGAGTCCTCGGCCTTAAGCAGATAGAGGGGTTGGCCATAGGGACTTTAAAGGAAAGCGCCTTTGAAGGTCCAGCGTTCACCCACTCAGATGTCAAGCCTGGCATGGTGACGAAGGGTAAAGTCATATCTGTTGATACATTCGGTGCCATTGTGCAATTTCCGGGTGGTCTGAAAGCAATGTGCCCACTTCAGCATATGTCTGAGTTTGAAGTTAGGAAGCCCAGGAAGAAGTTCAAGGTTGGAGCTGAATTAATATTTCGTGTGCTGGGCTGCAAATCAAAGAGAATAACTGTTACCTGCAAGAAAACACTTGTTAAGTCTAAACTTCCGATTTTGTGTTCTTACGCTGATGCAACTGAAGGACTAGTGACACATGGCTGGATAACAAAGATTGAAAAGAATGGATGCTTTGTTCGCTTCTATAATGGAGTGCAAGGATTTGTTGCCAGATTTGAACTTGGTTTAGAGCCTGGAAGTGATCCCGCTTCAGTGTTTCATATTGGGGAGGTTGTGAAATGTAGAGTTACCAGTGCGGTTCATGGTACTCGAAGGATCAACCTCAGTTTTATGATGAAGCCAACAAGCGTTTCTGAAGACGATTCAATCAAGTTAGGTAGTATTGTATCTGGGGTAATTGATAGTATAACTCCTCAGGCAGTCACTGTCCATGTTAAATCCAAAGGTCTTCTGAAGGGTACAATTTTTGCAGAACATTTAGCTGATCATCATGACCAAGCAAAATTAATGATATCACTTTTAAGACCTGGATTTGAGCTTGATAAGCTGCTGGTAATAGACATTGAAGGCAATAACCTGGCTCTCTCCTCAAAATATTCTCTCATCAAGTTTGCTGAAGAGCTCCCTTCGGATTTAAGTCAGCTCCAGCCAAACTCAGTGGTTCATGGTTATGTTTGTAACCTGATTGAGAATGGCTGTTTCGTCCGTTTCCTGGGTCGGTTGACTGGTTTCGCCCCGAGAAGCAAGGCAATTGACGAACCCAGGGCAGATCTCTCAGAATCCTTCTTTGTTGGACAATCGGTTCGGGCTAATATAGTTGATGTCAATCAAGAAAAAAGCAGGGTGACTCTTTCATTGAAACAGTCATCTTGTGCTTCTGTAGATGCTTCTTTTGTTCAAGAGTATTTCCTTACAGATGAGAAGATCTCGAACCTGCAATCATCTGATATTACTGAAAGCGAGTGTAGCTGGGTTGAGAAATTCTCTATTGGGAGTTTGATCATGGGAACCGTACAGGATAAAAATGACCTTGGTTTGGTGGTGAATTTTGACAATATTAATAATGTCCTTGGTTTTATACCTAAGTATCATTTGGGTGGAACTAGTTTGGAAAACGGCTCTGTTGTCCAAGCAGTTGTTCTTGATATTTCTAGGGCAGAGAGACTAGTTGATTTGTCTTTGAGGCCTGAGCTCATAAACAGCTCAGCCAAAGAGGTGTCCAACCGTCAGTCAAAAAAGAAACGTAAAAGAGGTATTTCCAAGGAACTTGAAGTCCACCAGAGGGTCAGCGCTGTTGTAGAGATTGTGAAGGAGCAATACTTGATTTTGTCGATTCCAGAACATAATTACACTATTGGATATGCGGCAGTATCAGACTATAACACACAGAAGTTACCAGTGAAACAGTTTACCACTGGACAAAGTGTTGTTGCGTCTGTTGAGGCTCTGCAAAACCCTTTGACGTCCGGGAGGTTGCTTTTACTTCTTGACTCTGTTTCCGGTAGTTCTGAGACATCGTCTAAGAGGGCAAAGAAGAAAGCCAATTGTGAAGTTGGTTCTGTTGTCCAAGCCGAGATTACTGAAATTAAGCCTTTTGAAGTAAGAGTAAACTTTGGCCAAAGTTTCCGAGGAAGAATCCACATAACGGAGGTGAATGATGTTGGTACAAATGAAGAACCTTTTGCCAAATTCAGAGTTGGGCAATCAGTGTCTGCAAGGGTTGTTGCAAAGCCCTGTCATACGGATAATAAAAAGAGTCAACTCTGGGAGCTTTCTGTAAAGCCTGCAATACTTAGAGACTCTGGTGAGCTGACTGAAGTGAGGGAACAACTTGAGTTTGTTTCTGGAGAGCCTGTCTGCGGATATGTCTACAAAGTGGATAAAGAATGGGTTTGGTTGGCAATATCTCGCAATGTGACTGCACGCATATTCATTTTAGACACTGCATGCGAAGCTCGTGAACTTGAGGAGTTCGAGGGGCGTTTTCCCATTGGTAAAGCTGTATCAGGCTATGTTTTGACGTACAATAAAGAGAAGAAAACTGTACGGTTGGTTCAGCGTCCACTACTGAATATCCAGAAAAGCATTGGCAATGATGGAGGGCCTAAAAAGGATAAACTAGACAGTAGCATTCCCGGTGATGATGCTACTCTATTCATTCATGAAGGAGACATTTTGGGTGGAAGAATTTCTAAGATACTTCCTGGTGTTGGTGGACTTCGTGTGCAAATAGGTCCTTATGTGTTTGGGAGAGTTCACTTTACTGAAATCAATGATTCATGGCTCTCCAATCCATTAGATGGTCTTCATGAAGGCCAATTTGTCAAATGCAAGGTCTTAGAAATCAGCAATTCTAGTAAAGGGACTTTGCAAATTGAACTGTCATTACGGACATCACTAGATGGCATGAGTTCGGACCATATCTCAGAAGCTTCCAGTAATAATGTTTTCAAGCGTTTTGAAAGGATTGAAGATCTTTCTCCTGATATGGGAATCGAGGGTTATGTCAAGAATACGATGTCAAAAGGTTGTTTTATCATGCTTTCAAGAACACTCGACGCAAAAGTTCTACTGTCAAATTTATCTGACACTTTTGTCAAGGATCCCGAAAATGAATTTCCAGTAGGAAAACTTGTCACTGGCAGGGTGTTAAATGTGGAGCCGTTATCGAAGCGGGTAGAAGTCACTTTGAAGAAAGTAAATGCTGGTGGGCCATCAAAATCTGAATCTTATGACCTGAAGCAGTTCCATGTTGGAGACATGATTTCTGGGAGAATCAAACGTGTGGAGCCCTATGGCTTGTTCATTGAAATAGACCAAACGGGCATGGTTGGATTATGTCATAAATCACAACTTTCTGATAATCATATCGAGGATATACATGCCAGATATGAAGCTGGGGAAAGCGTCACCGCAAAGATTTTAAAGCTGGACGAGGAAAGGCGACGTATATCGCTTGGGATGAAGAGTTCGTATTTTGTGAACGGCGATGATGACACGGCACAGCCACGTTCTGAAGAAAACGCTGATGAAGCCAGCATGGAGTGTGATCCAATCAATGGTTCGAAGTCGGGAGTTCTTGCAGCAGTTGGTGATTTTGGGTTCCAGGAAACAAACAGTGGCACTTCTCTGGCTATTGCCCAAGTAGAGTCAAGGGCTTCTATCCTTCCGCTTGAAGTTGACCTTGACGACATTGAGGAGGCGGACCTTGACAAGAATCAAAATCAGAAACTACAGGGAGCCGATAAAGATGAAAAGAGCAAGAGAAGGGAAAAGCAAAAAGACAAAGAGGAAAGAGAGAAAAAGATACAAGCTGCTGAAGGAAGATTGCTGGAGAATCACGCTCCTGAGAGTGCTGATGAATTTGAGAAAATGGTTAGAAGCTCTCCAAATAGCAGCTTTGTCTGGATTAAGTATATGGCGTTCATGCTCAGCTTGGCTGATATTGAGAAAGCCAGGTCCATTGCTGAGAGGGCTTTGAGGACTATAAATATTCGTGAAGAAGAAGAGAAGCTAAACATATGGGTTGCATACTTCAATTTGGAAAATGAACATGGAAGTCCTCCAGAGGAAGCTGTAAAGAAAGTTTTTGAAAGAGCGCGTCAATACTGTGACCCGAAGAAAGTTTACAATGCCCTCTTGGGCGTGTACGAGAGAACAGAGCAATATAAATTGGCTGATAAGCTGCTTGATGAGATGATCAAGAAGTTCAAGCAATCCTGCAAGGTTTGGTTACGGAAGATACAAAGTTATCTAAAGCAGGACGAGGAAAACATTCAGTCCGTCGTGAATCGTGCCTTGCTATGTCTTCCGCGCCATAAGCACATTAAATTTATATCACAGACAGCTATTCTTGAGTTCAAATGCGGAGTTGCAGACAGAGGGAGATCACTTTTTGAAGGCGTTCTTAGGGAGTACCCGAAAAGAACAGACTTGTGGAGTGTTTATCTTGACCAGGAGATCCGGTTGGGAGAAGTTGATGTGATTAGGTCTTTGTTCGAGAGAGCCATTAGCTTGAGCTTGCCTCCCAAGAAGATGAAGTTCTTATTCAAGAAGTTTTTGGAATATGAGAAATCTGCTGGTGACGAGGAGAGAGTGGAGTACGTGAAGCAAAGGGCAATGGAGTATGCTGACAGTACCTTGGCCTGA
Protein:  
MVAPSKRVPSGKRNDSTKAFKSSRKPFKKTKDDVAARSEAMALQLEEVPDFPRGGGSSLSKKEREKIHEEVDAEFDAGDERVAKRSKGGKPKKRNTSDVDELGSLFDGGLTGKRPRYANKITIKNISAGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDIFSVGQLVPCIVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQPGMVVTANVKSVEDHGYILQFGMPSITGFIKKSHEGTRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDLLIPGMMVNARVQSALENGLLLGFLMYFTGTVDLFHLQNPLCNKSWKDEYNPSKMVNARILFIDPSTRAVGLTLNPHLVGNKAPPLHVSSGDIFDEANVVRVDKSGLLLELPSKPVSTPAYVSTYDAAEDEVKKLEKKFKEGSRIRVRVLGLKQIEGLAIGTLKESAFEGPAFTHSDVKPGMVTKGKVISVDTFGAIVQFPGGLKAMCPLQHMSEFEVRKPRKKFKVGAELIFRVLGCKSKRITVTCKKTLVKSKLPILCSYADATEGLVTHGWITKIEKNGCFVRFYNGVQGFVARFELGLEPGSDPASVFHIGEVVKCRVTSAVHGTRRINLSFMMKPTSVSEDDSIKLGSIVSGVIDSITPQAVTVHVKSKGLLKGTIFAEHLADHHDQAKLMISLLRPGFELDKLLVIDIEGNNLALSSKYSLIKFAEELPSDLSQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDEPRADLSESFFVGQSVRANIVDVNQEKSRVTLSLKQSSCASVDASFVQEYFLTDEKISNLQSSDITESECSWVEKFSIGSLIMGTVQDKNDLGLVVNFDNINNVLGFIPKYHLGGTSLENGSVVQAVVLDISRAERLVDLSLRPELINSSAKEVSNRQSKKKRKRGISKELEVHQRVSAVVEIVKEQYLILSIPEHNYTIGYAAVSDYNTQKLPVKQFTTGQSVVASVEALQNPLTSGRLLLLLDSVSGSSETSSKRAKKKANCEVGSVVQAEITEIKPFEVRVNFGQSFRGRIHITEVNDVGTNEEPFAKFRVGQSVSARVVAKPCHTDNKKSQLWELSVKPAILRDSGELTEVREQLEFVSGEPVCGYVYKVDKEWVWLAISRNVTARIFILDTACEARELEEFEGRFPIGKAVSGYVLTYNKEKKTVRLVQRPLLNIQKSIGNDGGPKKDKLDSSIPGDDATLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDSWLSNPLDGLHEGQFVKCKVLEISNSSKGTLQIELSLRTSLDGMSSDHISEASSNNVFKRFERIEDLSPDMGIEGYVKNTMSKGCFIMLSRTLDAKVLLSNLSDTFVKDPENEFPVGKLVTGRVLNVEPLSKRVEVTLKKVNAGGPSKSESYDLKQFHVGDMISGRIKRVEPYGLFIEIDQTGMVGLCHKSQLSDNHIEDIHARYEAGESVTAKILKLDEERRRISLGMKSSYFVNGDDDTAQPRSEENADEASMECDPINGSKSGVLAAVGDFGFQETNSGTSLAIAQVESRASILPLEVDLDDIEEADLDKNQNQKLQGADKDEKSKRREKQKDKEEREKKIQAAEGRLLENHAPESADEFEKMVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYNALLGVYERTEQYKLADKLLDEMIKKFKQSCKVWLRKIQSYLKQDEENIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSAGDEERVEYVKQRAMEYADSTLA